Elaine Meng meng at cgl.ucsf.edu
Mon Oct 26 09:24:41 PDT 2020

Dear Asif,
You can just use menu: "File... Save PDB" to save a PDB file.   More information about the options here:


Or if you prefer to use commands, the "write" command can save PDB files:


I hope this helps,
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Oct 23, 2020, at 9:10 PM, ASIF JAHAN SHUVRO <asif.jahan.shuvro at g.bracu.ac.bd> wrote:
> Dear concern, this is Asif from BRAC University, Biotechnology program. I hope you're in good health.
> I need a little help from you. Recently, I have joined two peptide fragments by forming a peptide bond between them using your standalone UCSF Chimera software. The file has been saved as a Chimera session fle. However, I'm not finding any clue on how to convert it into an entire pdb file. I'm not being able to do any other modification to it since a pdb file is required for this purpose.
> Could you please help me out on this regard? kindly let me know how can I generate a pdb file from that session file format. I wish to hear your reply.
> Thanks in advance! 
> Regards,
> Asif Jahan Shuvro
> Biotechnology Program
> Department of Mathematics & Natural Sciences
> BRAC University
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