[Chimera-users] Density map tranformation
underoath006 at gmail.com
Tue Dec 22 12:31:45 PST 2020
Thanks a lot. I had experimented with fitting pdb structures and
calculating their transformation with the match move false showMatrix true
command, which slightly differ than measure rotation, I wonder why.
On Mon, Dec 21, 2020, 9:13 AM Elaine Meng <meng at cgl.ucsf.edu> wrote:
> Hi Ahmad,
> You can report in the Reply Log the transformation of a model relative to
> another model with "measure rotation"
> Also, you can save the current overall transformation of models (including
> any rotations/translations of the whole scene) to a text file with command
> I hope this helps,
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> > On Dec 18, 2020, at 10:09 PM, Ahmad Khalifa <underoath006 at gmail.com>
> > Hello,
> > When I fit two maps into each other, I get the transformation matrix in
> the reply log, but what if the moving map doesn't converge by fitmap and
> require some initial manual alignment, how can I calculate the
> transformation matrix for that?
> > Best regards.
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