[Chimera-users] Density map tranformation

Elaine Meng meng at cgl.ucsf.edu
Mon Dec 21 09:13:33 PST 2020

Hi Ahmad,
You can report in the Reply Log the transformation of a model relative to another model with "measure rotation"

Also, you can save the current overall transformation of models (including any rotations/translations of the whole scene) to a text file with command "matrixget"

I hope this helps,
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Dec 18, 2020, at 10:09 PM, Ahmad Khalifa <underoath006 at gmail.com> wrote:
> Hello,
> When I fit two maps into each other, I get the transformation matrix in the reply log, but what if the moving map doesn't converge by fitmap and require some initial manual alignment, how can I calculate the transformation matrix for that?
> Best regards. 

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