[Chimera-users] Trouble understanding intersurf results

[Kenward Vaughan]

On 4/21/20 8:40 PM, Kenward Vaughan wrote:
...

> The command I use is  > > intersurf :.b :.k,.m pair atom prune 3 bias 0.5 select > true > > 
followed by adjusting the transparency. The result surprised me, > both 
before and after lighting up the atoms and bonds. I've attached > a 
(hopefully small) jpg. > ...

By the way, I just realized with further experimentation that a prune 
distance of 3 gives NO result ("no interface found") using the graphical 
interface with chain B and either K or M.  Changing this to 10 in my 
command still gives the same weird results...



Kenward
-- 
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