<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
</head>
<body>
On 4/21/20 8:40 PM, Kenward Vaughan wrote:<br>
...<br>
<br>
<span style="white-space: pre-wrap; display: block; width: 98vw;">> The command I use is
>
> intersurf :.b :.k,.m pair atom prune 3 bias 0.5 select
> true
>
> followed by adjusting the transparency. The result surprised me,
> both before and after lighting up the atoms and bonds. I've attached
> a (hopefully small) jpg.
>
</span>...<br>
<br>
By the way, I just realized with further experimentation that a
prune distance of 3 gives NO result ("no interface found") using the
graphical interface with chain B and either K or M. Changing this
to 10 in my command still gives the same weird results...<br>
<p><br>
</p>
<p><br>
</p>
Kenward<br>
-- <br>
In a completely rational society, the best of us would aspire to be
<br>
_teachers_ and the rest of us would have to settle for something
less, <br>
because passing civilization along from one generation to the next <br>
ought to be the highest honor and the highest responsibility anyone
<br>
could have. - Lee Iacocca<br>
<br>
Any fool can know. The point is to understand. - Albert Einstein<br>
<br>
</body>
</html>