[Chimera-users] Atom box

MARIA CLARA BLANES MIRA c.blanes at goumh.umh.es
Tue Oct 8 08:32:41 PDT 2019

Dear Chimera experts,
I have been measuring surface volumes by using the atom box option in order to obtain a surface slice volume and then the volume measure.  But how could I use the atom box in the command line?
Thank you!

import chimera
import os
from chimera import runCommand
runCommand(’sel :2.A,19.A,25.A, 5.B, 23.B, 26.B’)  # to define the box
runCommand(‘atomBox ????’)
runCommand('measure volume #0')
runCommand('close all')
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