<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Dear Chimera experts,<div class="">I have been measuring surface volumes by using the atom box option in order to obtain a surface slice volume and then the volume measure. But how could I use the atom box in the command line?</div><div class="">Thank you!</div><div class="">clara</div><div class=""><br class=""></div><div class=""><div class=""><br class=""></div><div class=""><br class=""></div><div class="">import chimera</div><div class="">import os</div><div class="">from chimera import runCommand</div><div class=""><font color="#e32400" class="">runCommand(’sel :2.A,19.A,25.A, 5.B, 23.B, 26.B’) # to define the box</font></div><div class=""><font color="#e32400" class="">runCommand(‘atomBox ????’)</font></div><div class="">runCommand('measure volume #0')</div><div class="">runCommand('close all')</div></div></body></html>