[Chimera-users] Fetch by ID

[Marco Sette]

Hi,

no problems with the new version indeed.

Thanks a lot,
Marco


Il 07/11/19 18:46, Eric Pettersen ha scritto:
> In addition to what Elaine says, you need to upgrade your version of 
> Chimera to at least 1.13.1.  The UniProt web site changed not that 
> long ago and previous versions of Chimera aren’t compatible with those 
> changes.
>
> —Eric
> Eric Pettersen
> UCSF Computer Graphics Lab
>
>
>
>> On Nov 7, 2019, at 7:30 AM, Elaine Meng <meng at cgl.ucsf.edu 
>> <mailto:meng at cgl.ucsf.edu>> wrote:
>>
>> Hi Marco,
>> Did you check that ID at the UniProt website?    I tried these 
>> fetches that I’d never done before (so the files weren’t already 
>> cached locally) and they worked fine.
>>
>> open uniprot:DMD_HUMAN
>> open uniprot:P08069
>>
>> So maybe the ID that you entered is obsolete.  If you can see that 
>> specific entry at the UniProt database but the fetch doesn’t work, 
>> then you would have to let us know what ID you used.
>>
>> I hope this helps,
>> Elaine
>> -----
>> Elaine C. Meng, Ph.D.
>> UCSF Chimera(X) team
>> Department of Pharmaceutical Chemistry
>> University of California, San Francisco
>>
>>> On Nov 7, 2019, at 6:16 AM, Marco Sette <sette at uniroma2.it 
>>> <mailto:sette at uniroma2.it>> wrote:
>>>
>>> Dear all,
>>> i'm experiencing some problems with the Fetch by ID on the Uniprot 
>>> database.
>>> The error message is
>>> Invalid Uniprot accessio number: "about: legacy-compat"
>>> The Fetch by ID onto the PDB database works fine.
>>> Any suggestions?
>>> Thanks
>>> Marco
>>
>>
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>
-- 
Dr.Marco Sette, Ph.D.
Department of Chemical Sciences and Technology
University of Rome, "Tor Vergata"
via della Ricerca Scientifica, 00133, Rome, Italy
e-mail: sette at uniroma2.it
e-mail: m77it at yahoo.it
Tel.: +39-0672594424
Fax: +39-0672594328
http://stc.uniroma2.it/?page_id=622&cn-entry-slug=marco-sette

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