[Chimera-users] Coloring map by curvature

temban billyhp btemban at yahoo.com
Sun Nov 3 16:30:07 PST 2019

Hi sir, I downloaded chimera 1.13.1 at a website for free. Also, I am able to use the software without any licence needed. I carried out some research work using the software. Presently I am about to submit a paper for publication using your references. In this case, Will it be proper for me to submit a paper for publication using your references. Best wishes Billy. 
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  On Mon, 7 Oct 2019 at 9:21 PM, Tom Goddard<goddard at sonic.net> wrote:   Hi Shengyou,
  The curvature.py script was attached to the Chimera mailing list message you found.
It got renamed with a ".bin" suffix, so after you download you should change the file name to curvature.py.  A similar capability is in ChimeraX, the "measure convexity" command
Here's an example image using "measure convexity #1" on EMDB 0074.

On Oct 6, 2019, at 7:15 AM, huangsy at hust.edu.cn wrote:

 Hi Tom,


 I just noticed that you had helped a user about "Coloring EM map by curvature" in UCSF Chimera through some scripts like the following

   open 1grl
	molmap #0 15 grid 2 model #1
	select #1
	open ~/Desktop/curvature.py
Could you please send me the "curvature.py" file or tell me where to download it?

 Thank you very much for your help! 

 Best regards,




 Shengyou Huang, PhD

 Professor of Biophysics
School of Physics
Huazhong University of Science and Technology
Email: huangsy at hust.edu.cn
Lab web: http://huanglab.phys.hust.edu.cn/

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