[Chimera-users] Coloring map by curvature

[temban billyhp]

Hi sir, I downloaded chimera 1.13.1 at a website for free. Also, I am able to use the software without any licence needed. I carried out some research work using the software. Presently I am about to submit a paper for publication using your references. In this case, Will it be proper for me to submit a paper for publication using your references. Best wishes Billy. 
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  On Mon, 7 Oct 2019 at 9:21 PM, Tom Goddard<goddard at sonic.net> wrote:   Hi Shengyou,
  The curvature.py script was attached to the Chimera mailing list message you found.
 http://www.cgl.ucsf.edu/pipermail/chimera-users/2014-January/009580.html
It got renamed with a ".bin" suffix, so after you download you should change the file name to curvature.py.  A similar capability is in ChimeraX, the "measure convexity" command
 https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/measure.html#convexity
Here's an example image using "measure convexity #1" on EMDB 0074.
 Tom



On Oct 6, 2019, at 7:15 AM, huangsy at hust.edu.cn wrote:

 Hi Tom,

 


 I just noticed that you had helped a user about "Coloring EM map by curvature" in UCSF Chimera through some scripts like the following

   open 1grl
	molmap #0 15 grid 2 model #1
	select #1
	open ~/Desktop/curvature.py
Could you please send me the "curvature.py" file or tell me where to download it?
 


 Thank you very much for your help! 

 Best regards,

 


 Shengyou

 --

 Shengyou Huang, PhD

 Professor of Biophysics
School of Physics
Huazhong University of Science and Technology
Email: huangsy at hust.edu.cn
Lab web: http://huanglab.phys.hust.edu.cn/


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