Hi sir, <div id="yMail_cursorElementTracker_1572826482834">I downloaded chimera 1.13.1 at a website for free. Also, I am able to use the software without any licence needed. I carried out some research work using the software. Presently I am about to submit a paper for publication using your references. In this case, Will it be proper for me to submit a paper for publication using your references. </div><div id="yMail_cursorElementTracker_1572827375801">Best wishes </div><div id="yMail_cursorElementTracker_1572827394996">Billy. <br><div id="ymail_android_signature"><a id="ymail_android_signature_link" href="https://go.onelink.me/107872968?pid=InProduct&c=Global_Internal_YGrowth_AndroidEmailSig__AndroidUsers&af_wl=ym&af_sub1=Internal&af_sub2=Global_YGrowth&af_sub3=EmailSignature">Sent from Yahoo Mail on Android</a></div> <br> <blockquote style="margin: 0 0 20px 0;"> <div style="font-family:Roboto, sans-serif; color:#6D00F6;"> <div>On Mon, 7 Oct 2019 at 9:21 PM, Tom Goddard</div><div><goddard@sonic.net> wrote:</div> </div> <div style="padding: 10px 0 0 20px; margin: 10px 0 0 0; border-left: 1px solid #6D00F6;"> <div id="yiv9183306736"><div>Hi Shengyou,<div class="yiv9183306736"><br class="yiv9183306736"></div><div class="yiv9183306736"> The curvature.py script was attached to the Chimera mailing list message you found.</div><div class="yiv9183306736"><br class="yiv9183306736"></div><div class="yiv9183306736"><span class="yiv9183306736Apple-tab-span" style="white-space:pre;"> </span><a rel="nofollow" target="_blank" href="http://www.cgl.ucsf.edu/pipermail/chimera-users/2014-January/009580.html" class="yiv9183306736">http://www.cgl.ucsf.edu/pipermail/chimera-users/2014-January/009580.html</a></div><div class="yiv9183306736"><br class="yiv9183306736"></div><div class="yiv9183306736">It got renamed with a ".bin" suffix, so after you download you should change the file name to curvature.py. A similar capability is in ChimeraX, the "measure convexity" command</div><div class="yiv9183306736"><br class="yiv9183306736"></div><div class="yiv9183306736"><span class="yiv9183306736Apple-tab-span" style="white-space:pre;"> </span><a rel="nofollow" target="_blank" href="https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/measure.html#convexity" class="yiv9183306736">https://www.rbvi.ucsf.edu/chimerax/docs/user/commands/measure.html#convexity</a></div><div class="yiv9183306736"><br class="yiv9183306736"></div><div class="yiv9183306736">Here's an example image using "measure convexity #1" on EMDB 0074.</div><div class="yiv9183306736"><br class="yiv9183306736"></div><div class="yiv9183306736"><span class="yiv9183306736Apple-tab-span" style="white-space:pre;"> </span>Tom</div><div class="yiv9183306736"><br class="yiv9183306736"></div><div class="yiv9183306736"><img id="yiv918330673618795649-753B-48EE-97A3-E8CC48C2624B" src="cid:J5S2JXGRYSe9ab9h2Kz0" yahoo_partid="1.2.2" class="yiv9183306736"><br class="yiv9183306736"><div><br class="yiv9183306736"><blockquote type="cite" class="yiv9183306736"><div class="yiv9183306736">On Oct 6, 2019, at 7:15 AM, <a rel="nofollow" ymailto="mailto:huangsy@hust.edu.cn" target="_blank" href="mailto:huangsy@hust.edu.cn" class="yiv9183306736">huangsy@hust.edu.cn</a> wrote:</div><br class="yiv9183306736Apple-interchange-newline"><div class="yiv9183306736"><p class="yiv9183306736">
Hi Tom,
</p><p class="yiv9183306736">
<br class="yiv9183306736">
</p><p class="yiv9183306736">
I just noticed that you had helped a user about "Coloring EM map by curvature" in UCSF Chimera through some scripts like the following
</p><p class="yiv9183306736">
<span style="white-space:pre-wrap;" class="yiv9183306736"> </span><span style="white-space:pre-wrap;" class="yiv9183306736"> open 1grl</span>
</p>
<pre style="white-space:pre-wrap;" class="yiv9183306736"> molmap #0 15 grid 2 model #1
select #1
open ~/Desktop/curvature.py
</pre>
Could you please send me the "<span style="white-space:pre-wrap;" class="yiv9183306736">curvature.py</span><span style="white-space:pre-wrap;" class="yiv9183306736">" file or tell me where to download it?</span><p class="yiv9183306736">
<br class="yiv9183306736">
</p><p class="yiv9183306736">
<span style="white-space:pre-wrap;" class="yiv9183306736">Thank you very much for your help!</span>
</p><p class="yiv9183306736">
Best regards,
</p><p class="yiv9183306736">
<br class="yiv9183306736">
</p><p class="yiv9183306736">
Shengyou
</p><p class="yiv9183306736">
--
</p><p class="yiv9183306736">
Shengyou Huang, PhD
</p>
<span class="yiv9183306736"><p class="yiv9183306736">
Professor of Biophysics<br class="yiv9183306736">
School of Physics<br class="yiv9183306736">
Huazhong University of Science and Technology<br class="yiv9183306736">
Email: <a rel="nofollow" ymailto="mailto:huangsy@hust.edu.cn" target="_blank" href="mailto:huangsy@hust.edu.cn" class="yiv9183306736">huangsy@hust.edu.cn</a><br class="yiv9183306736">
Lab web: <a rel="nofollow" target="_blank" href="http://huanglab.phys.hust.edu.cn/" class="yiv9183306736">http://huanglab.phys.hust.edu.cn/</a>
</p>
</span></div></blockquote></div><br class="yiv9183306736"></div></div></div>_______________________________________________<br>Chimera-users mailing list: <a ymailto="mailto:Chimera-users@cgl.ucsf.edu" href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</a><br>Manage subscription: <a href="http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users" target="_blank">http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users</a><br> </div> </blockquote></div>