[Chimera-users] Volume save after volume changes

Ryan Harlich ryanharlich at hotmail.com
Mon Jul 1 13:07:18 PDT 2019

Hi Elaine,

What about hideDust? I was trying to resample a selected surface that had hide dust alterations to it. Would this also only be a display setting too then; therefore, I could not hide dust then resample. That is what I am trying to accomplish, but the alteration does not seem to save.

Ryan Harlich

Sent from my Verizon, Samsung Galaxy smartphone

-------- Original message --------
From: Elaine Meng <meng at cgl.ucsf.edu>
Date: 7/1/19 12:58 PM (GMT-08:00)
To: Ryan Harlich <ryanharlich at hotmail.com>
Cc: chimera-users at cgl.ucsf.edu
Subject: Re: [Chimera-users] Volume save after volume changes

Hi Ryan,
Changing the isosurface contour level is not changing the map.  It’s analogous to opening an atomic structure from the PDB and then changing its coloring…. just a display setting, not an alteration of the underlying data, and these display settings aren’t part of the formats in which the data are saved.
I hope this helps,
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Jul 1, 2019, at 9:04 AM, Ryan Harlich <ryanharlich at hotmail.com> wrote:
> Hi Chimera,
> I am having problems saving changes of volume.
> Here is my script:
>        • open C:\Users\ Desktop\density.map
>        • volume #0 level 1.0
>        • sel #0
>        • volume sel save C:\Users\ Desktop\density2.mrc
> This does not save the change at line 2. How can I go about to save the change?
> Best,
> Ryan Harlich

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