[Chimera-users] Output chain sequences
pett at cgl.ucsf.edu
Wed Jul 11 15:20:38 PDT 2018
In fixing a problem with the “Realign Chains” feature of MultAlignViewer, I created this problem in Align Chains. I’ve fixed the latter now and the fix will be in tomorrow’s daily build (and in the 1.13.1 and/or 1.14 release).
UCSF Computer Graphics Lab
> On Jul 10, 2018, at 11:53 AM, Healey, Joe <J.R.J.Healey at warwick.ac.uk> wrote:
> Hi Elaine,
> Ok good to know, thanks. For reference, it wasn't working for me on a 1.11 install either (though timing wise that may have been due to server downtime and not a bug).
> I'll try a couple of other builds and see what I get.
> Joe Healey
> M.Sc. B.Sc. (Hons) MRSB
> PhD Student
> MOAC CDT, Senate House
> University of Warwick
> Mob: +44 (0) 7536 042620 | Email: J.R.J.Healey at warwick.ac.uk <mailto:J.R.J.Healey at warwick.ac.uk>
> Jointly working in:
> Waterfield Lab <http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/> (WMS Microbiology and Infection Unit)
> and the Gibson Lab <http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/> (Warwick Chemistry)
> Twitter: @JRJHealey <https://twitter.com/JRJHealey> | Website: MOAC Page <http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey> | ORCID: orcid.org/0000-0002-9569-6738 <http://orcid.org/0000-0002-9569-6738>
> From: Elaine Meng <meng at cgl.ucsf.edu>
> Sent: 10 July 2018 19:04:02
> To: Healey, Joe
> Cc: chimera-users at cgl.ucsf.edu BB
> Subject: Re: [Chimera-users] Output chain sequences
> Hi Joe,
> Ahem, something must have gone awry. I also get the error with the 1.13 release but not with a 1.13 daily build from April 25 or the 1.12 release. I’ll create a bug ticket for this…. good thing you mentioned it.
> Cases I tried in the April 25 daily build, using “Align Chain Sequences” with default settings (both ran instantly with no problems):
> (1) all 4 chains of 4hhb to each other
> (2) the A chains of 2mnr, 4enl, and 1muc
> The April 25 build is just the one I happened to have handy… newer ones might work too. From the 1.13 release it still works to use the same web service via “realign sequences” in the Edit menu of an existing alignment, but apparently not via Align Chain Sequences. In the meanwhile, maybe you can use an older version for that. Sorry for the problems,
> > On Jul 10, 2018, at 10:33 AM, Healey, Joe <J.R.J.Healey at warwick.ac.uk> wrote:
> > Hi Elaine,
> > That's strange in that case. I still receive this error (and I reinstalled the latest stable version of Chimera today too).
> > I'm familiar with this type of Python error, but not sure what it means in the context of not being able to communicate with the servers.
> > The error:
> > ValueError: Too make values to unpack
> > File "/Applications/Chimera.app/Contents/Resources/share/AlignChains/gui.py, line 109, in __init__
> > serviceName, inOutFlags, serviceOptions = serviceinfo
> > Joe Healey
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