[Chimera-users] Output chain sequences

Healey, Joe J.R.J.Healey at warwick.ac.uk
Tue Jul 10 11:53:40 PDT 2018

Hi Elaine,

Ok good to know, thanks. For reference, it wasn't working for me on a 1.11 install either (though timing wise that may have been due to server downtime and not a bug).

I'll try a couple of other builds and see what I get.

Joe Healey

M.Sc. B.Sc. (Hons) MRSB
PhD Student
MOAC CDT, Senate House
University of Warwick
Mob: +44 (0) 7536 042620  |  Email: J.R.J.Healey at warwick.ac.uk

Jointly working in:
Waterfield Lab<http://www2.warwick.ac.uk/fac/med/research/tsm/microinfect/staff/waterfieldlab/> (WMS Microbiology and Infection Unit)
and the Gibson Lab<http://www2.warwick.ac.uk/fac/sci/chemistry/research/gibson/gibsongroup/> (Warwick Chemistry)

Twitter: @JRJHealey<https://twitter.com/JRJHealey>  |  Website: MOAC Page<http://www2.warwick.ac.uk/fac/sci/moac/people/students/2013/joseph_healey> | ORCID: orcid.org/0000-0002-9569-6738
From: Elaine Meng <meng at cgl.ucsf.edu>
Sent: 10 July 2018 19:04:02
To: Healey, Joe
Cc: chimera-users at cgl.ucsf.edu BB
Subject: Re: [Chimera-users] Output chain sequences

Hi Joe,
Ahem, something must have gone awry.  I also get the error with the 1.13 release but not with a 1.13 daily build from April 25 or the 1.12 release.  I’ll create a bug ticket for this…. good thing you mentioned it.

Cases I tried in the April 25 daily build, using “Align Chain Sequences” with default settings (both ran instantly with no problems):

(1) all 4 chains of 4hhb to each other
(2) the A chains of 2mnr, 4enl, and 1muc

The April 25 build is just the one I happened to have handy… newer ones might work too.  From the 1.13 release it still works to use the same web service via “realign sequences” in the Edit menu of an existing alignment, but apparently not via Align Chain Sequences.  In the meanwhile, maybe you can use an older version for that. Sorry for the problems,

> On Jul 10, 2018, at 10:33 AM, Healey, Joe <J.R.J.Healey at warwick.ac.uk> wrote:
> Hi Elaine,
> That's strange in that case. I still receive this error (and I reinstalled the latest stable version of Chimera today too).
> I'm familiar with this type of Python error, but not sure what it means in the context of not being able to communicate with the servers.
> The error:
> ValueError: Too make values to unpack
> File "/Applications/Chimera.app/Contents/Resources/share/AlignChains/gui.py, line 109, in __init__
>   serviceName, inOutFlags, serviceOptions = serviceinfo
> Joe Healey

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