[Chimera-users] MD movie residue network analysis

Eric Pettersen pett at cgl.ucsf.edu
Mon Jan 22 14:03:26 PST 2018

	If I open a trajectory and delete the starting residues before generating the Cytoscape RIN, the numbering does not start at 1 for me.  Perhaps you need to use Chimera’s Help->Report A Bug menu item to start a bug report so that we can investigate your problem without involving everyone on the mailing list….


	Eric Pettersen
	UCSF Computer Graphics Lab

> On Jan 18, 2018, at 11:24 PM, Neha Gandhi <n.gandhiau at gmail.com> wrote:
> Dear List,
> I am loading gromacs trajectory in Chimera using .tpr and .xtc files. The residue number in gro file starts from 83 and not from 1. When I perform residue network analyis using chimera and cytoscape, the numbering of residues starts from 1. Is there a way to change the residue numbers either in .tpr file or in cytoscape? Changing the residue numbering after the trajectory is loaded doesn't help.
> Thank you for your attention.
> Regards,
> Neha
> -- 
> Regards,
> Dr. Neha S. Gandhi,
> Vice Chancellor's Research Fellow,
> Queensland University of Technology,
> 2 George Street, Brisbane, QLD 4000
> Australia
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