<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi,<div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>If I open a trajectory and delete the starting residues before generating the Cytoscape RIN, the numbering does not start at 1 for me. Perhaps you need to use Chimera’s Help->Report A Bug menu item to start a bug report so that we can investigate your problem without involving everyone on the mailing list….</div><div class=""><br class=""></div><div class="">—Eric</div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>Eric Pettersen</div><div class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>UCSF Computer Graphics Lab</div></div>
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<div><br class=""><blockquote type="cite" class=""><div class="">On Jan 18, 2018, at 11:24 PM, Neha Gandhi <<a href="mailto:n.gandhiau@gmail.com" class="">n.gandhiau@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class=""><div class=""><div class=""><div class="">Dear List,<br class=""><br class=""></div>I am loading gromacs trajectory in Chimera using .tpr and .xtc files. The residue number in gro file starts from 83 and not from 1. When I perform residue network analyis using chimera and cytoscape, the numbering of residues starts from 1. Is there a way to change the residue numbers either in .tpr file or in cytoscape? Changing the residue numbering after the trajectory is loaded doesn't help.<br class=""><br class=""></div>Thank you for your attention.<br class=""><br class=""></div>Regards,<br class=""></div>Neha<br clear="all" class=""><div class=""><div class=""><div class=""><div class=""><div class=""><br class="">-- <br class=""><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr" class=""><div class="">Regards,<br class=""><span style="color:rgb(51,51,51)" class="">Dr. Neha S. Gandhi,<br class="">Vice Chancellor's Research Fellow,<br class="">Queensland University of Technology,<br class=""></span></div><div class=""><span style="color:rgb(51,51,51)" class="">2 George Street, Brisbane, QLD 4000<br class=""></span></div><div class=""><span style="color:rgb(51,51,51)" class="">Australia</span><br class=""><a class="">LinkedIn</a><br class=""><a class="">Research Gate</a><br class=""><div style="padding: 0px; margin-left: 0px; margin-top: 0px; overflow: hidden; word-wrap: break-word; font-size: 10px; text-align: left; line-height: 130%;" class=""></div></div></div></div>
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