[Chimera-users] Map conservation of my sequence compared to sequence alignment

[mfellner at msu.edu]

Good day

I like the mapping sequence conservation tool in chimera, however I ran into a problem that IÂ could not overcome with anything IÂ found online.

I have the consensus mapped onto my protein but that is not what IÂ want. IÂ want to show how the residues of my protein are conserved. For example at a particular residue the consensus is a C but in my structure its a W. at the moment the W is colored to be highly conserved based on the consenus of the C. The W is maybe 15% conserved, how can IÂ map the conservation of my sequence compared to all the other sequences.

IÂ hope IÂ explained what my issue is
Thank you for this great tool
Matthias Fellner
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