[Chimera-users] question on visualization

[C.J.]

Thank you very much!

regards,
Jianhao

2017-12-01 17:28 GMT+08:00 Gabor PAPAI <papai at igbmc.fr>:

> Hi Jianhao,
>
> You have to untick the “cap high values at box faces” to see surfaces
> bellow 0 threshold. You can find this option in Volume Viewer -> Features
> -> Surface and Mesh options at the bottom of the panel.
>
> Best regards,
> Gabor
> ---
> Gabor Papai
> IGBMC
> Integrated Structural Biology
> 1, rue Laurent Fries
> <https://maps.google.com/?q=1,+rue+Laurent+Fries&entry=gmail&source=g>,
> Bp 10142
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> Tel: +33-3-69485288 <+33%203%2069%2048%2052%2088>
>
> On 1 Dec 2017, at 4:43 , C.J. <biocjh at gmail.com> wrote:
>
> Hi specialists,
>
> I have a problem when adjusting the level of a map. If the level > 0, it
> seemed OK, but when it is less than 0, it showed a solid box. This is
> different from EMAN2. In EMAN2, the threshold less than 0 also works. I'm
> not sure whether the defining of level is the same as the threshold in
> EMAN2. Or is there any other way to show the density of a map as in EMAN2
> with threshold less than 0?
> Some snapshots of the visualization in both programs are attached to the
> post.
> Thank you!
>
>
> regards,
> Jianhao
> <7a.png><7b.png><10a.png><10b.png>__________________________
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-- 
Best regards!
C.J.
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