[Chimera-users] Help with Autodock Vina

Jonathan Y Wang wang.ying.jonathan at utexas.edu
Tue Jul 26 23:40:24 PDT 2016

To whom it may concern,

Hi, I was trying to dock a ligand into my receptor and all of the other
ligands so far have worked and outputted a value, but this one compound
never outputs a .pdbqt file. The other files such as the .conf and .pdb
files have been created, the bottom of the screen no longer says "execution
in progress", and the green box remains. I've looked at the tutorial for
AutodockVina online and tried fidgeting around with it, but I seem to be
extremely lost. I was wondering if you had any pointers, tips, or anything
at all that could help me.

All the best,
Jonathan Wang
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