[Chimera-users] Select residues with missing atoms?

[Oliver Clarke]

Thanks Elaine! That looks like it'll do the trick nicely :)

Oli.

On Tue, Jan 19, 2016 at 5:20 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Oliver,
> Attached is a script that Eric made me years ago to select all the
> incomplete residues.  I just did a spot-check on 5BTR and opening this
> script did select all the residues with missing atoms that were listed in
> the PDB header.
>
> I hope this helps,
> Elaine
> ----------
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
>
>
> P.S. I don’t see it listed in this Chimera Python-scripts page, will add
> it soon…
>
> <http://www.cgl.ucsf.edu/trac/chimera/wiki/Scripts>
>
> > On Jan 19, 2016, at 1:59 PM, Oliver Clarke <olibclarke at gmail.com> wrote:
> >
> > Hello,
> >
> > Is there any way to select/color all protein residues with incomplete
> sidechains?
> >
> > This would be very helpful when looking at a structure and deciding
> whether it is necessary to run dock prep to fill them in prior to
> performing other calculations (e.g. sometimes I am only concerned with what
> is going on around a ligand binding site).
> >
> > Cheers,
> > Oliver.
> > _______________________________________________
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> > Chimera-users at cgl.ucsf.edu
> > http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
>
>
>
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