[Chimera-users] Failure to reproduce complete Consurf output

[Eric Pettersen]

Hi George,
	In the Save EPS dialog you need to change the “extent” setting from “visible region” to “entire alignment”.  Also, it is showing the histogram (at the top of the alignment).  I think you mean the dendrogram (on the left of the alignment)?  Anyway, when you save EPS in this situation it should actually produce two files, one that ends in “-alignment.eps” (that contains the alignment) and one ending in “-names.eps” (that contains the dendrogram and sequence names).  Unfortunately it is an implementation limitation that it cannot produce a combined file, though in some cases it is useful to have the “-names” file available separately.

—Eric

	Eric Pettersen
	UCSF Computer Graphics Lab

> On Oct 16, 2015, at 9:14 AM, George Tzotzos <gtzotzos at me.com> wrote:
> 
> Hi everybody,
> 
> I’m attaching a snapshot of the output of a Consurf job (snapshot1). Trying to save the file in EPS format produces only A PART of the right-hand-side pane of the output. No histogram is produced (see output.eps).
> 
> I’d appreciate any suggestions as to how to produce a complete output.
> 
> Thank you in advance
> 
> George
> 
> <snapshot1.tiff><output.eps>
> 
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