[Chimera-users] Electrostatic Potential based on Poisson-Boltzmann using APBS

leila karami karami.leila1 at gmail.com
Sat Jul 18 00:37:18 PDT 2015

Dear Elaine,

Very thanks for your time and consideration.

I downloaded the daily build version of chimera.

After using PDB2PQR in command line, status line shows that output.pqr file
was generated.

Then, I used APBS in command line, dx file was created. But after coloring,
the colors are as black and white.

I think chimera uses a pqr file other than output.pqr file which PDB2PQR
has generated.

After using APBS in command line, pqr, in and dx files were created in
following address:


How to find output.pqr file to use that as inout for APBS?

Is my manner wrong?

Thanks in advance,
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