[Chimera-users] Can Chimera specifically superimpose renamed atoms of a ligand ?

[Yogendra Ramtirtha]

I have to detect the presence of a ligand in many PDB files.
So I have renamed all the Carbon atoms of the "HETATM" entries in these PDB
files and I have also renamed the Carbon atoms of the file with known
ligand.
Can I use Chimera to specifically superimpose these renamed atoms ? If yes,
can you tell me how can I do this ?

In general, can Chimera superimpose ligands in 2 PDB files ?

Thank you
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