[Chimera-users] Proposal to add ability to load CATH domains in Chimera
pett at cgl.ucsf.edu
Mon Sep 29 12:54:12 PDT 2014
Oh, and thanks for the info BTW. Very happy to add this capability to Chimera.
On Sep 29, 2014, at 11:59 AM, Eric Pettersen <pett at cgl.ucsf.edu> wrote:
> On Sep 29, 2014, at 7:27 AM, Tony Lewis <t.lewis at ucl.ac.uk> wrote:
>> Dear Chimera people,
>> Many thanks to all Chimera contributors.
>> Please may I propose an addition to allow users to access our CATH domains in the same way that they can currently access SCOP domains ( https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/scop.html )?
>> PDBs for CATH domains can be loaded from URI's of the form: http://data.cathdb.info/latest_release/pdb/1cukA01
>> For information, CATH domain IDs contain 7 digits:
>> 1-4 : (eg 1cuk ) : PDB code
>> 5 : (eg A ) : chain code
>> 6-7 : (eg 01 ) : 2-digit domain number ( '00' for whole chain domains )
>> We here at CATH would be very happy to provide any other information required to implement this.
> Hi Tony,
> I've added CATH fetching to Chimera and it will show up in the tonight's daily build. Look for builds dated September 27 or later. The above information was sufficient. Let me know if you find any rough edges. :-)
> Eric Pettersen
> UCSF Computer Graphics Lab
> Chimera-users mailing list
> Chimera-users at cgl.ucsf.edu
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