<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Oh, and thanks for the info BTW. Very happy to add this capability to Chimera.<div><br></div><div>--Eric</div><div><br><div><div>On Sep 29, 2014, at 11:59 AM, Eric Pettersen <<a href="mailto:pett@cgl.ucsf.edu">pett@cgl.ucsf.edu</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><meta http-equiv="Content-Type" content="text/html charset=us-ascii"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>On Sep 29, 2014, at 7:27 AM, Tony Lewis <<a href="mailto:t.lewis@ucl.ac.uk">t.lewis@ucl.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div dir="ltr"><div><div>Dear Chimera people,<br><br></div><div>Many thanks to all Chimera contributors.<br><br>Please may I propose an addition to allow users to access our CATH domains in the same way that they can currently access SCOP domains ( <a href="https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/scop.html">https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/scop.html</a> )?<br><br></div><div></div><div>PDBs for CATH domains can be loaded from URI's of the form: <a href="http://data.cathdb.info/latest_release/pdb/1cukA01">http://data.cathdb.info/latest_release/pdb/1cukA01</a><br><br></div><div></div><div>For information, CATH domain IDs contain 7 digits:<br></div><ul><li><span style="font-family:courier new,monospace">1-4 : (eg 1cuk ) : PDB code <br></span></li><li><span style="font-family:courier new,monospace"> 5 : (eg A ) : chain code</span></li><li><span style="font-family:courier new,monospace">6-7 : (eg 01 ) : 2-digit domain number ( '00' for whole chain domains )</span></li></ul></div><div><div></div><div>We here at CATH would be very happy to provide any other information required to implement this.</div></div></div></blockquote><br></div><div>Hi Tony,</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>I've added CATH fetching to Chimera and it will show up in the tonight's daily build. Look for builds dated September 27 or later. The above information was sufficient. Let me know if you find any rough edges. :-)</div><div><br></div><div>--Eric</div><br><div apple-content-edited="true">
<span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px; font-family: Helvetica; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="margin: 0px; "><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>Eric Pettersen</font></div><div style="margin: 0px; "><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>UCSF Computer Graphics Lab</font></div><div style="margin: 0px; "><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> </span><a href="http://www.cgl.ucsf.edu/">http://www.cgl.ucsf.edu</a></font></div><br class="Apple-interchange-newline"></span>
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