[Chimera-users] Conserved amino acids

Rebecca Swett rswett at chem.wayne.edu
Fri May 17 06:33:05 PDT 2013

Use match-> align to get a structural superposition and sequence alignment, then set your alignment type to AL2CO. Go to render by attribute and then hit the select by attribute tab. Select the range from 0-whatever your maximum is. Should be around 4 if you've got any conserved tryptophans. That will select all invariant residues. 

Jean-Paul Boissel <boissel at uni-mainz.de> wrote:

>By homology modelling, I got putative structures for five closely related
>amino acid transporters.  Is there any script that will allow the quick
>selection and visualisation of the invariant residues on the structures?
>Chimera-users mailing list
>Chimera-users at cgl.ucsf.edu
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