[Chimera-users] Generating trajectory of a user-defined plane

Lili Peng lilipeng at gmail.com
Thu Apr 18 15:46:42 PDT 2013


I am interested in measuring the deviation of an helical segment with
respect to the initial structure in a GROMACS trajectory.  I have already
uploaded my *.tpr and *.trr files into MD Movie and have defined a plane
through the helical segment within the initial structure.  Is it possible
to define another plane through the same helix and track the intersection
angle throughout the trajectory?

Thank you,
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