[Chimera-users] Denaturing a protein

vamsee vamseedharr at gmail.com
Thu Sep 13 18:31:18 PDT 2012

Hi Elaine,

Thanks for the answer for the previous question. I am back with one more :)

Is there a way to completely denature a protein in Chimera? The idea is to
completely unfold a particular protein (for ex: chemical denaturation
GdHCl/Urea or thermal denaturation) to its primary structure. Also can this
be modeled in such a way that we can extract thermodynamic parameters from
the modeling? I do understand this sounds a lot like a Molecular Dynamics
simulation but maybe there is a way in Chimera?

Thanks again

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