[Chimera-users] How to save VIPER transformation matrix

snoze pa snoze.pa at gmail.com
Thu Mar 29 12:29:47 PDT 2012

Thanks Tom, It was a great help. Yes it is working with Chimera 1.6

On Thu, Mar 29, 2012 at 12:15 PM, Tom Goddard <goddard at sonic.net> wrote:

> In Chimera 1.6 if you use "sym #0 group i222" to copy molecule #0 using
> icosahedral symmetry and then save #0 as a PDB then it puts the 60 symmetry
> matrices in PDB REMARK 350 BIOMT matrices.  Chimera 1.5 does not do this.
>    Tom
>  Dear Chimera Users,
>>  Is it possible to save the coordinates after the VIPER transformation
>> (xyz-2 fold symmetry) in Chimera. I can create a multiscale biological
>> molecule in chimera but it is not saving the viper matrix in pdb file.
>> Please note that this pdb is a model not the crystal structure and I am
>> trying to save the viper matrix for this pdb.
>> Thank you, S
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