[Chimera-users] RMSD calculation

[Austin B. Yongye]

Hi Dr. Huang,
I would like to use the "nogui" mode.
Thanks a lot!
Austin-


--- On Tue, 7/10/12, Conrad Huang <conrad at cgl.ucsf.edu> wrote:

> From: Conrad Huang <conrad at cgl.ucsf.edu>
> Subject: Re: [Chimera-users] RMSD calculation
> To: "Austin B. Yongye" <ybausty at yahoo.com>
> Cc: chimera-users at cgl.ucsf.edu
> Date: Tuesday, July 10, 2012, 9:18 AM
> Will you be running Chimera with a
> graphical interface?  If so, then the 
> Ensemble Cluster tool already prints the RMSD matrix to the
> Reply Log. 
> If you want to get the RMSD in "nogui" mode, please let us
> know and we 
> can figure something out.
> 
> Conrad
> 
> On 7/10/12 7:57 AM, Austin B. Yongye wrote:
> > Hello Chimera-developers/users:
> > Does someone have a script that can perform pairwise
> backbone RMSD
> > calculations for a group of pdb structures in a file
> and write out the
> > RMSD matrix? This may already be implemented in the
> clustering routine.
> > Just need to get the RMSDs.
> > Thanks,
> > Austin-
> >
> >
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> >
> 
>