[Chimera-users] Visualising AutoLigand affinity points

[Elaine Meng]

Hi George,
A picture alone isn't that useful.  Would need the actual file to be sure, but you might try using command "~bond" to remove all bonds, and then showing as "ball" (actually ball & stick but without bonds there will just be balls).  Or if those are not the right size either: when showing either balls or spheres, you can adjust size to any value using the "vdwdefine" command.
<http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/vdwdefine.html>
Best,
Elaine
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Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Feb 9, 2012, at 6:05 AM, George Tzotzos wrote:

> Hi,
> I'm attaching a jpg image of ligand affinity map fill points generated by AutoLigand. My question is whether there's a way to depict these fill points as "disconnected" spheres.
> Actions/spheres generates something like I'd like to see but the size of the spheres is too large.
> Regards
> George