[Chimera-users] Visualising AutoLigand affinity points

Elaine Meng meng at cgl.ucsf.edu
Thu Feb 9 09:23:32 PST 2012

Hi George,
A picture alone isn't that useful.  Would need the actual file to be sure, but you might try using command "~bond" to remove all bonds, and then showing as "ball" (actually ball & stick but without bonds there will just be balls).  Or if those are not the right size either: when showing either balls or spheres, you can adjust size to any value using the "vdwdefine" command.
Elaine C. Meng, Ph.D.                       
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Feb 9, 2012, at 6:05 AM, George Tzotzos wrote:

> Hi,
> I'm attaching a jpg image of ligand affinity map fill points generated by AutoLigand. My question is whether there's a way to depict these fill points as "disconnected" spheres.
> Actions/spheres generates something like I'd like to see but the size of the spheres is too large.
> Regards
> George

More information about the Chimera-users mailing list