[Chimera-users] Incomplete chain contain many dotted lines while displaying

Elaine Meng meng at cgl.ucsf.edu
Tue Apr 24 09:23:44 PDT 2012

Hi Junfeng,
Use command: ~longbond


(the command line can be shown using the menu: Favorites... Command Line)

I hope this helps,
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

On Apr 23, 2012, at 7:58 PM, Junfeng Huang wrote:

> Hello Everyone,
> I have a problem while display PDB file.
> I extract the residues from protein-protein interface by ligplus into a new PDB file, and want to display and analysis it. As the file contain only the residues form interface, they are discontinuous.
> While display with pymol, it is OK. However, While using Chimera, there are many dotted lines between the residues. I know what the dotted lines are, but I do want to hide all these lines, can somebody please give me some hints?
> I sent two figures in the attachment. It's the first time I used mail-list, if it doesn't support figures, please check here:
> Interface display by pymol
> http://bbs.sysu.edu.cn/attach/Pictures/1335235173.JPG
> Interface display by Chimera
> http://bbs.sysu.edu.cn/attach/Pictures/1335235254.JPG
> Thank you very much!
> <interface_pymol.png><interface_Chimera.png>

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