[Chimera-users] Command for Selecting Marker & Color Zone

Tom Goddard goddard at sonic.net
Mon Mar 7 11:54:34 PST 2011

Hi Huy,

   There is no Chimera command for color zone, but there should be one.  
It is possible to make a Python script that does this and you could run 
that script with the Chimera runScript command.  I put a Python script 
czone.py that does this on the Chimera Python scripts page


I also added a feature request for a color zone command.


Is the reason you want this command because you are writing some script, 
or you just prefer to use commands when looking at the data interactively?


Bui Khanh Huy wrote:
> I have a density map and 3 marker sets for coloring my density map. Is this possible to select the 3 marker sets and color my density map with a selected radius (Color Zone tool) by command line?

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