[Chimera-users] rotamers

Eric Pettersen pett at cgl.ucsf.edu
Thu Feb 3 16:29:40 PST 2011

On Feb 3, 2011, at 5:19 AM, Ricardo Silva wrote:

> I am using chimera program to view the rotamers list of pdb archive.  
> I have proceeded from the following form: first I open an archive  
> for chimera, later go to tools menu and alow:
> Structute Editing > Rotamer, after that i chose rotamer type and  
> rotamer library then select aply and chimera display rotamers values  
> and its respective probabilities.
> My objective is to save the rotamers list in an archive. Would like  
> know how as can I make these procedures using the chimera commands.

Hi Ricardo,
	If you want to save less-probable rotamers as structures, the changes  
I mentioned in the mail to Angelica may help you.  If you want to save  
all the chi-angle values as a text file, well, they all come from  
publicly-available sources so you could get them yourself.  There are  
links from the Rotamers help page to the source for each library.


                         Eric Pettersen
                         UCSF Computer Graphics Lab

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