<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>On Feb 3, 2011, at 5:19 AM, Ricardo Silva wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div><p class="western" style="margin-bottom: 0cm; ">I am using chimera program to view the rotamers list of pdb archive. I have proceeded from the following form: first I open an archive for chimera, later go to tools menu and alow:</p><p class="western" style="margin-bottom: 0cm; ">Structute Editing > Rotamer, after that i chose<b><span class="Apple-converted-space"> </span>rotamer type</b><span class="Apple-converted-space"> </span>and<b><span class="Apple-converted-space"> </span>rotamer library</b><span class="Apple-converted-space"> </span>then select aply and chimera display rotamers values and its respective probabilities.<span class="Apple-converted-space"> </span><br></p><p class="western" style="margin-bottom: 0cm; ">My objective is to save the rotamers list in an archive. Would like know how as can I make these procedures using the chimera commands.<span class="Apple-converted-space"> </span></p></div></span></blockquote><br></div><div>Hi Ricardo,</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>If you want to save less-probable rotamers as structures, the changes I mentioned in the mail to Angelica may help you. If you want to save all the chi-angle values as a text file, well, they all come from publicly-available sources so you could get them yourself. There are links from the Rotamers help page to the source for each library.</div><div><br></div><div>--Eric</div><div><br></div><br><div apple-content-edited="true"> <span class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 16px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; "><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>Eric Pettersen</font></p><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>UCSF Computer Graphics Lab</font></p><p style="margin: 0.0px 0.0px 0.0px 0.0px"><font face="Helvetica" size="5" style="font: 16.0px Helvetica"><span class="Apple-converted-space"> </span><a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></font></p><br class="Apple-interchange-newline"></div></span> </div><br></body></html>