[Chimera-users] problem with match function (superposition)

Ken Shimo shimo.ken at gmail.com
Tue Dec 13 17:08:10 PST 2011


I'm working with evolutionary algorithms applied to protein-protein docking.
I'd like to calculate de RMSD between the native complex and the complex
achieved with my docking model. For that I was trying to make the
superposition of the complexes using the match function through the Chimera
command line.
I called the function as:

match #0 #1

and got the following message:

Atoms in each selection must be in the same model

I'd like to know what am I doing wrong, or if there is anyway other way to
obtain the RMSD and the superposed complexes.
I'm using the complex code PDB 1CHO.

Thanks for any help,

Helder Ken Shimo

BSc in Biomedical Informatics (University of São Paulo - Brazil)
MSc candidate in Bioinformatics (University of São Paulo - Brazil)

"When I get sad, I stop being sad and be awesome instead." (Neil Patrick
Harris as Barney Stinson)
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