[Chimera-users] Morphing script

Rajan Prabu jrajanprabu at gmail.com
Wed Sep 8 06:26:37 PDT 2010

Dear Chimera users,

I am trying to make a morphing pdb with chimera without opening the
interface using --nogui option. It works and calculates the interpolation
and then it crashes. If i understood it correctly,  it is trying to open the
MD Movie GUI. By default morph movie command calls the MD Movie
interface.  Is it possible to make it work without opening the interface.

I am trying to run the script with chimera using the following command

chimera --nogui --script chi1.py

and my script chi1.py is the following

from chimera import runCommand
runCommand('open starting.pdb')
runCommand('open end.pdb')
runCommand('morph start #0')
runCommand('morph interpolate #1')
runCommand('morph movie')

Thank you very much for your inputs.

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