[Chimera-users] DCD to PDB file Residue number

snoze pa snoze.pa at gmail.com
Wed Jun 9 09:58:18 PDT 2010

Thanks Eric for your help. I will download the daily build.

On Tue, Jun 8, 2010 at 5:36 PM, Eric Pettersen <pett at cgl.ucsf.edu> wrote:
> Hi Snoze,
> That information isn't preserved from the PSF.  I just now made some changes
> to preserve it so if you get tomorrow's daily build, the residue numbers
> should correspond to what's in the PSF.
> As an aside, the first trajectory format that Chimera supported was Amber,
> and Amber prmtop files don't have residue number information, so there was
> no provision for preserving it when other formats were added.
> --Eric
>                         Eric Pettersen
>                         UCSF Computer Graphics Lab
>                         http://www.cgl.ucsf.edu
> On Jun 8, 2010, at 1:51 PM, snoze pa wrote:
> Dear Chimera Users,
> I have a simple query related to the residue numbers in chimera. If I
> will save pdb file in chimera then the residue numbers are not
> changing but if I will save a pdb file from DCD trajectory file then
> it set the first residue number to 1 and so on. How to save it to
> original PDB residue number, which is not starting from residue number
> 1.
> Thank you for your help.
> S
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