[Chimera-users] Morphing Code Request!

[Elaine Meng]

Hi Eric,
Now there is a "morph" command to create the morph trajectory and a  
"coordset" command to play the trajectory. The "morph" command is  
available in version 1.3 (Dec 2008) and newer, and the "coordset"  
command is available in recent daily builds:

<http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/morph.html>
<http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/coordset.html>

The online tutorial you are viewing is from last summer.  There is a  
newer online tutorial on movie-making that uses the commands mentioned  
above (scroll down to the very end and click link to "1m51.cmd" to see  
the contents of that command file):

<http://www.cgl.ucsf.edu/chimera/tutorials/movies09/moviemaking.html>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
                      http://www.cgl.ucsf.edu/home/meng/index.html

On Jun 11, 2009, at 11:11 AM, Eric J. Choi wrote:

> Hello, chimera-users,
>
> Hi, my name is Eric Choi and currently I am interning at the Ren Lab  
> at
> mission bay for Dr. Ren. For one of my assignments, I was to make a  
> video
> of a conformation change of PPAR-GAMMA, from open to closed  
> structure with
> the addition of a ligand. Upon trying to make this happen, I  
> realized that
> I need the morphing python code(I believe it is) to be able to  
> complete
> this step. This is what the movie making tutorial told me in the part
> "Ligand Flying into Unbound Conformation". If I could get the  
> command to
> make the morph(python code) that would be great. Thank you!
>
> -Eric Choi