[chimera-dev] (no subject)

[Kavya Shankar]

Hi,

I am trying to open the same pdb file twice and apply mm command on the
chains.

The following script loops through the files in the folder so i open the
same pdb twice:

#!/bin/bash

for file in `ls tmp_d2`
do

chimera --nogui --silent tmp_d2/$file tmp_d2/$file tmp_d2/$file
tmp_d2/$file chim.cmd > test_A.pdb
mv test_A.pdb temper/$file
echo "$file"

done

File "chim.cmd" has the following:
mm #0:.A:.B #1:.B:.A pair ss
measure rotation #0 #1

I get the following error:
1c9o_1.pdb
Error while sourcing chim.cmd, line 1:

"measure rotation #0 #1"

Rotation angle is near zero (0 degrees)

I should be getting an angle of 180 degrees because they are all dimers. I
have two versions of chimera on my system 1.7 and 1.11.2, does that make a
difference?

Thank you.

Regards,
Kavya Shankar
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