Foreign Packages in Chimera

Package

Version

Latest Releases

Comment

Python	2.5	2.6.4/3.1.1	Computation (used in core)
numpy	1.2.1	1.3.0/1.4.0rc1	Computation (numeric arrays, used in many extensions)
msms	1.3	-	Computation (surface computation)
otf	-	-	Computation (object technology platform, used in core)
openssl	0.9.8g/0.9.7l	0.9.8.l/1.0.0beta4	Computation (secure socket layer, used in registration)
MMTK	2.5.23	2.6.1/2.7.0	Computation (molecular modeling, used in reading movies and energy minimization)
zlib	1.2.3	-	Computation (compression algorithm, used by Python, Imaging)
boost	1_38_0/1_34_1	1_41_0	Computation (C++ library, used in AmberTools)
expat	2.0.1	-	Computation (XML parsing, used in Python, swish-e)

Imaging	1.1.6	-	Graphics (PIL, used in core)
jpeg	6b	7	Graphics (used by PIL)
libpng	1.2.16	1.2.41	Graphics (used by povray, ffmpeg)
tiff	3.8.2	3.9.2	Graphics (used in itops)
Mesa	7.0.2	7.6	Graphics (libGLU, libGL, headless chimera)
PyOpenGL	2.0.1.09	3.0.0/3.0.1b1	Graphics (used in 2D Labels)
tr	1.1	1.3	Graphics (tiled rendering, used in saving images)
freetype	2.3.9	2.3.11	Graphics (font rendering, used by ftgl, Tk X11)
ftgl	2.1.3svn	2.1.3rc5	Graphics (OpenGL font rendering)
freefont-ttf	20090104	?	Graphics (Unicode TTF fonts, used in core)
fontconfig	2.2.99/2.5.93	2.8	Graphics (font locator, used in Tk)
autostereo	0.9.4	-	Graphics (SGI stereo, gone)

Tcl/Tk	8.5/cvs	8.5	UI (widget toolkit)
Tix	8.4.3	-	UI (widget toolkit extending Tk)
Togl	2.1	-	UI (Tk OpenGL widget)
Pmw	1.3	1.3.2	UI (Python MegaWidgets, used in core)
libspnav	0.2.1	-	UI (Space Navigator library, used on Linux)
matplotlib	0.98.5.2	0.99.1.1	UI (plotting library, used in SAXS)

Scientific	2.7.8	2.7.10/2.9.0	IO (netcdf interface)
netcdf	3.6.1	3.6.3	IO (multi-dimensional array file format, used by Scientific)
pytables	2.1.1	2.1.2	IO (Python HDF format library)
hdf5	1.6.5	1.6.10/1.8.4	IO (HDF format, used by pytables)
pymmlib	0.9.9	1.0.0	IO (mmCIF format, used by mmCIF)
ZSI	2.1-a1	-	IO (web services library, used by WebServices)
comtypes	0.4.1	0.6.1	IO (MS COM library, used on Windows only)
omniORB	4.0.x/2.x	?	IO (CORBA ORB, used by Collaboratory, gone)

al2co	1.0	1.2	Application (used in MultAlignViewer)
qhull	2003.1	-	Application (used in Intersurf)
POV-Ray	3.6	3.7beta	Application (ray tracer, used in image saving)
ffmpeg	0.4.9-pre1	0.5	Application (used in movie recording)
AmberTools	1.0	1.2	Application (used in Solvate, Add Ions, etc)
antechamber	1.27	-	Application (used in DockPrep, AddCharge)

cmake	2.6.3	2.8.0	Utility (used in building AmberTools)
happydoc	r3_1	-	Utility (used in generating documentation, gone)
swish-e	0.4	2.4.7	Utility (used in indexing documentation)
unzip	5.52	?	Utility (used in installer)