wiki:TracQuery

Version 4 (modified by trac, 9 years ago) ( diff )

--

Trac Ticket Queries

Table of Contents

In addition to reports, Trac provides support for custom ticket queries, which can be used to display tickets that meet specified criteria.

To configure and execute a custom query, switch to the View Tickets module from the navigation bar, and select the Custom Query link.

Filters

When you first go to the query page, the default filter will display tickets relevant to you:

  • If logged in then all open tickets, it will display open tickets assigned to you.
  • If not logged in but you have specified a name or email address in the preferences, then it will display all open tickets where your email (or name if email not defined) is in the CC list.
  • If not logged in and no name/email is defined in the preferences, then all open issues are displayed.

Current filters can be removed by clicking the button to the left with the minus sign on the label. New filters are added from the pulldown lists at the bottom corners of the filters box; 'And' conditions on the left, 'Or' conditions on the right. Filters with either a text box or a pulldown menu of options can be added multiple times to perform an Or on the criteria.

You can use the fields just below the filters box to group the results based on a field, or display the full description for each ticket.

After you have edited your filters, click the Update button to refresh your results.

Some shortcuts can be used to manipulate checkbox filters.

  • Clicking on a filter row label toggles all checkboxes.
  • Pressing the modifier key while clicking on a filter row label inverts the state of all checkboxes.
  • Pressing the modifier key while clicking on a checkbox selects the checkbox and deselects all other checkboxes in the filter.

The modifier key is platform and browser dependent. On Mac the modified key is Option/Alt or Command. On Linux the modifier key is Ctrl + Alt. Opera on Windows seems to use Ctrl + Alt, while Alt is effective for other Windows browsers.

Clicking on one of the query results will take you to that ticket. You can navigate through the results by clicking the Next Ticket or Previous Ticket links just below the main menu bar, or click the Back to Query link to return to the query page.

You can safely edit any of the tickets and continue to navigate through the results using the Next/Previous/Back to Query links after saving your results. When you return to the query any tickets which were edited will be displayed with italicized text. If one of the tickets was edited such that it no longer matches the query criteria , the text will also be greyed. Lastly, if a new ticket matching the query criteria has been created, it will be shown in bold.

The query results can be refreshed and cleared of these status indicators by clicking the Update button again.

Saving Queries

Trac allows you to save the query as a named query accessible from the reports module. To save a query ensure that you have Updated the view and then click the Save query button displayed beneath the results. You can also save references to queries in Wiki content, as described below.

Note: one way to easily build queries like the ones below, you can build and test the queries in the Custom report module and when ready - click Save query. This will build the query string for you. All you need to do is remove the extra line breaks.

Note: you must have the REPORT_CREATE permission in order to save queries to the list of default reports. The Save query button will only appear if you are logged in as a user that has been granted this permission. If your account does not have permission to create reports, you can still use the methods below to save a query.

You may want to save some queries so that you can come back to them later. You can do this by making a link to the query from any Wiki page. 

[query:status=new|assigned|reopened&version=1.0 Active tickets against 1.0]

Which is displayed as:

Active tickets against 1.0

This uses a very simple query language to specify the criteria, see Query Language.

Alternatively, you can copy the query string of a query and paste that into the Wiki link, including the leading ? character: 

[query:?status=new&status=assigned&status=reopened&group=owner Assigned tickets by owner]

Which is displayed as:

Assigned tickets by owner

Customizing the table format

You can also customize the columns displayed in the table format (format=table) by using col=<field>. You can specify multiple fields and what order they are displayed in by placing pipes (|) between the columns: 

[[TicketQuery(max=3,status=closed,order=id,desc=1,format=table,col=resolution|summary|owner|reporter)]]

This is displayed as:

Results (1 - 3 of 20254)

1 2 3 4 5 6 7 8 9 10 11 →
Ticket Resolution Summary Owner Reporter
#27061 can't_reproduce Gromacs 2025 support pett chimera-bug-report@…
#27058 can't_reproduce Gromacs 2026 support pett chimera-bug-report@…
#27057 not_a_bug FindHBond: bad number of bonds pett gisele.ramox@…
1 2 3 4 5 6 7 8 9 10 11 →

Full rows

In table format you can also have full rows by using rows=<field>: 

[[TicketQuery(max=3,status=closed,order=id,desc=1,format=table,col=resolution|summary|owner|reporter,rows=description)]]

This is displayed as:

Results (1 - 3 of 20254)

1 2 3 4 5 6 7 8 9 10 11 →
Ticket Resolution Summary Owner Reporter
#27061 can't_reproduce Gromacs 2025 support pett chimera-bug-report@…
Description 
The following bug report has been submitted:
Platform:        Linux64 (X11) Linux 6.17.0-23-generic x86_64
Chimera Version: 1.19_b42556
Description
(Describe the actions that caused this problem to occur here)

Open models


Reply log:
using memory mapping
VERSION 2025.4
using floats
version 137, generation 28
66232 atoms
GLP-1 RECEPTOR BOUND WITH PFIZER SMALL MOLECULE AGONIST in water
mol name: Protein_chain_R
6281 atoms
382 residues
mol name: N5M
5 atoms
6 residues
IndexError Exception in Tk callback
  Function: <function command at 0x6fffe95e0c80> (type: <type 'function'>)
  Module: <module 'chimera.baseDialog' from '/home/abdullah/chimera/share/chimera/baseDialog.pyc'> (line: 447)
  Args: ()
Traceback (innermost last):
  File "/home/abdullah/chimera/lib/python2.7/site-packages/Pmw/Pmw_1_3_3/lib/PmwBase.py", line 1747, in __call__
    return apply(self.func, args)
  File "/home/abdullah/chimera/share/chimera/baseDialog.py", line 449, in command
    getattr(s, buttonFuncName(txt))()
  File "/home/abdullah/chimera/share/chimera/baseDialog.py", line 704, in OK
    self.Apply()
  File "/home/abdullah/chimera/share/Trajectory/EnsembleLoader.py", line 92, in Apply
    self.callback)
  File "/home/abdullah/chimera/share/Trajectory/formats/Gromacs/__init__.py", line 68, in loadEnsemble
    startFrame, endFrame, callback)
  File "/home/abdullah/chimera/share/Trajectory/formats/Gromacs/__init__.py", line 79, in loadEnsemble
    ensemble = Gromacs(topology, trajectory, startFrame, endFrame)
  File "/home/abdullah/chimera/share/Trajectory/formats/Gromacs/Gromacs.py", line 26, in __init__
    self.topology = TprTopology(topology)
  File "/home/abdullah/chimera/share/Trajectory/formats/Gromacs/Gromacs.py", line 104, in __init__
    self._readTopology(version)
  File "/home/abdullah/chimera/share/Trajectory/formats/Gromacs/Gromacs.py", line 500, in _readTopology
    self.resNames.append(symbols[self.xdr.unpack_uint()])
IndexError: list index out of range

IndexError: list index out of range

  File "/home/abdullah/chimera/share/Trajectory/formats/Gromacs/Gromacs.py", line 500, in _readTopology
    self.resNames.append(symbols[self.xdr.unpack_uint()])

See reply log for Python traceback.






IndexError Exception in Tk callback
Function:<function command at 0x6fffe95e0c80> (type:<type 'function'>)
Module:<module 'chimera.baseDialog' from '/home/abdullah/chimera/share/chimera/baseDialog.pyc'> (line: 447)
Args: ()
Traceback (innermost last):
File "/home/abdullah/chimera/lib/python2.7/site-packages/Pmw/Pmw_1_3_3/lib/PmwBase.py", line 1747, in __call__
return apply(self.func, args)
File "/home/abdullah/chimera/share/chimera/baseDialog.py", line 449, in command
getattr(s, buttonFuncName(txt))()
File "/home/abdullah/chimera/share/chimera/baseDialog.py", line 704, in OK
self.Apply()
File "/home/abdullah/chimera/share/Trajectory/EnsembleLoader.py", line 92, in Apply
self.callback)
File "/home/abdullah/chimera/share/Trajectory/formats/Gromacs/__init__.py", line 68, in loadEnsemble
startFrame, endFrame, callback)
File "/home/abdullah/chimera/share/Trajectory/formats/Gromacs/__init__.py", line 79, in loadEnsemble
ensemble = Gromacs(topology, trajectory, startFrame, endFrame)
File "/home/abdullah/chimera/share/Trajectory/formats/Gromacs/Gromacs.py", line 26, in __init__
self.topology = TprTopology(topology)
File "/home/abdullah/chimera/share/Trajectory/formats/Gromacs/Gromacs.py", line 104, in __init__
self._readTopology(version)
File "/home/abdullah/chimera/share/Trajectory/formats/Gromacs/Gromacs.py", line 500, in _readTopology
self.resNames.append(symbols[self.xdr.unpack_uint()])
IndexError: list index out of range

――――――――――――――――――――
OpenGL Vendor: NVIDIA Corporation
OpenGL Renderer: NVIDIA GeForce RTX 5060 Ti/PCIe/SSE2
OpenGL Version: 4.6.0 NVIDIA 595.58.03
/etc/lsb-release:
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=24.04
DISTRIB_CODENAME=noble
DISTRIB_DESCRIPTION="Ubuntu 24.04.4 LTS"
/etc/debian_version:
trixie/sid
/etc/os-release:
PRETTY_NAME="Ubuntu 24.04.4 LTS"
NAME="Ubuntu"
VERSION_ID="24.04"
VERSION="24.04.4 LTS (Noble Numbat)"
VERSION_CODENAME=noble
ID=ubuntu
ID_LIKE=debian
HOME_URL="https://www.ubuntu.com/"
SUPPORT_URL="https://help.ubuntu.com/"
BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/"
PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy"
UBUNTU_CODENAME=noble
LOGO=ubuntu-logo
/proc/cpuinfo:
cpu: 16 GenuineIntel Intel(R) Core(TM) i5-14490F (x86_64)
cpu MHz: 4323.150
cache: 24576 KB
/proc/meminfo:
MemTotal: 32645816 kB
Graphics:
01:00.0 VGA compatible controller [0300]: NVIDIA Corporation Device [10de:2d04] (rev a1)
Subsystem: ZOTAC International (MCO) Ltd. Device [19da:1772]
Kernel driver in use: nvidia

――――――――――――――――――――
Multisampling: False
Shadows: False
Shadow texture size: 2048
Silhouettes: False
Depth cue: True
Subdivision quality: 1.50
Single-layer transparency: True
Transparent background: False
Shaders supported: True
Using shader: True
Window size: 512 384
Camera mode: mono
Orthographic projection: False
Center of rotation: front center
Near/far clipping: False
Key light: True
Fill light: True
Back light: False
Ambient light: 0.20
Specular sharpness: 30.00
Specular reflectivity: 1.00

――――――――――――――――――――
AntialiasLines: native
AntialiasPoints: native
BlendEquation: native
BlendFuncSeparate: native
BrokenAttribLocation: native, disabled
ChoosePixelFormat: not supported
ColorTable: native
CompileAndExecute: native, disabled
CompiledVertexArray: extension
CubeMap: native
CullVertex: not supported
DrawElementsInstanced: native
DrawRangeElements: native
FBConfig: native
FBOShadows: native
FastMultisampling: native
FramebufferMultisample: native
FramebufferObject: native
LimitVertexAttribDivisor: native, disabled
Multisample: native
Multitexture: native
PackedDepthStencil: native
PalettedTexture: not supported
PointParameters: native
SeamlessCubeMap: native
SeparateSpecularColor: native
Shading: native
Shadows: native
StereoMultisample: native
StereoRubberBanding: native
Texture3D: native
TextureColorTable: not supported
TextureEdgeClamp: native
TrustColorLogicBlend: native
TrustNormals: native
VertexArray: native
VertexAttrib: native
VertexAttribDivisor: native
VertexBufferObject: native
WindowPos: not supported
#27058 can't_reproduce Gromacs 2026 support pett chimera-bug-report@…
Description 
The following bug report has been submitted:
Platform:        Linux64 (X11) Linux 6.17.0-23-generic x86_64
Chimera Version: 1.20_b42613
Description
(Describe the actions that caused this problem to occur here)

Open models


Reply log:
using memory mapping
VERSION 2026.2
using floats
version 138, generation 29
69422 atoms
D(2) DOPAMINE RECEPTOR, ENDOLYSIN CHIMERA
mol name: Protein_chain_A
6870 atoms
423 residues
mol name: C1
5 atoms
6 residues
IndexError Exception in Tk callback
  Function: <function command at 0x7b83d9efa2a8> (type: <type 'function'>)
  Module: <module 'chimera.baseDialog' from '/opt/UCSF/Chimera64-2026-03-11/share/chimera/baseDialog.pyc'> (line: 447)
  Args: ()
Traceback (innermost last):
  File "/opt/UCSF/Chimera64-2026-03-11/lib/python2.7/site-packages/Pmw/Pmw_1_3_3/lib/PmwBase.py", line 1747, in __call__
    return apply(self.func, args)
  File "/opt/UCSF/Chimera64-2026-03-11/share/chimera/baseDialog.py", line 449, in command
    getattr(s, buttonFuncName(txt))()
  File "/opt/UCSF/Chimera64-2026-03-11/share/chimera/baseDialog.py", line 704, in OK
    self.Apply()
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/EnsembleLoader.py", line 92, in Apply
    self.callback)
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/__init__.py", line 68, in loadEnsemble
    startFrame, endFrame, callback)
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/__init__.py", line 79, in loadEnsemble
    ensemble = Gromacs(topology, trajectory, startFrame, endFrame)
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/Gromacs.py", line 26, in __init__
    self.topology = TprTopology(topology)
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/Gromacs.py", line 104, in __init__
    self._readTopology(version)
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/Gromacs.py", line 500, in _readTopology
    self.resNames.append(symbols[self.xdr.unpack_uint()])
IndexError: list index out of range

IndexError: list index out of range

  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/Gromacs.py", line 500, in _readTopology
    self.resNames.append(symbols[self.xdr.unpack_uint()])

See reply log for Python traceback.


using memory mapping
Unexpected end of file; make sure you specified the correct topology file and that it isn't truncated.

using memory mapping
VERSION 2026.2
using floats
version 138, generation 29
69422 atoms
D(2) DOPAMINE RECEPTOR, ENDOLYSIN CHIMERA
mol name: Protein_chain_A
6870 atoms
423 residues
mol name: C1
5 atoms
6 residues
IndexError Exception in Tk callback
  Function: <function command at 0x7b83d96b8668> (type: <type 'function'>)
  Module: <module 'chimera.baseDialog' from '/opt/UCSF/Chimera64-2026-03-11/share/chimera/baseDialog.pyc'> (line: 447)
  Args: ()
Traceback (innermost last):
  File "/opt/UCSF/Chimera64-2026-03-11/lib/python2.7/site-packages/Pmw/Pmw_1_3_3/lib/PmwBase.py", line 1747, in __call__
    return apply(self.func, args)
  File "/opt/UCSF/Chimera64-2026-03-11/share/chimera/baseDialog.py", line 449, in command
    getattr(s, buttonFuncName(txt))()
  File "/opt/UCSF/Chimera64-2026-03-11/share/chimera/baseDialog.py", line 704, in OK
    self.Apply()
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/EnsembleLoader.py", line 92, in Apply
    self.callback)
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/__init__.py", line 68, in loadEnsemble
    startFrame, endFrame, callback)
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/__init__.py", line 79, in loadEnsemble
    ensemble = Gromacs(topology, trajectory, startFrame, endFrame)
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/Gromacs.py", line 26, in __init__
    self.topology = TprTopology(topology)
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/Gromacs.py", line 104, in __init__
    self._readTopology(version)
  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/Gromacs.py", line 500, in _readTopology
    self.resNames.append(symbols[self.xdr.unpack_uint()])
IndexError: list index out of range

IndexError: list index out of range

  File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/Gromacs.py", line 500, in _readTopology
    self.resNames.append(symbols[self.xdr.unpack_uint()])

See reply log for Python traceback.






IndexError Exception in Tk callback
Function:<function command at 0x7b83d96b8668> (type:<type 'function'>)
Module:<module 'chimera.baseDialog' from '/opt/UCSF/Chimera64-2026-03-11/share/chimera/baseDialog.pyc'> (line: 447)
Args: ()
Traceback (innermost last):
File "/opt/UCSF/Chimera64-2026-03-11/lib/python2.7/site-packages/Pmw/Pmw_1_3_3/lib/PmwBase.py", line 1747, in __call__
return apply(self.func, args)
File "/opt/UCSF/Chimera64-2026-03-11/share/chimera/baseDialog.py", line 449, in command
getattr(s, buttonFuncName(txt))()
File "/opt/UCSF/Chimera64-2026-03-11/share/chimera/baseDialog.py", line 704, in OK
self.Apply()
File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/EnsembleLoader.py", line 92, in Apply
self.callback)
File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/__init__.py", line 68, in loadEnsemble
startFrame, endFrame, callback)
File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/__init__.py", line 79, in loadEnsemble
ensemble = Gromacs(topology, trajectory, startFrame, endFrame)
File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/Gromacs.py", line 26, in __init__
self.topology = TprTopology(topology)
File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/Gromacs.py", line 104, in __init__
self._readTopology(version)
File "/opt/UCSF/Chimera64-2026-03-11/share/Trajectory/formats/Gromacs/Gromacs.py", line 500, in _readTopology
self.resNames.append(symbols[self.xdr.unpack_uint()])
IndexError: list index out of range

――――――――――――――――――――
OpenGL Vendor: Mesa
OpenGL Renderer: llvmpipe (LLVM 20.1.2, 256 bits)
OpenGL Version: 4.5 (Compatibility Profile) Mesa 25.2.8-0ubuntu0.24.04.1
/etc/debian_version:
trixie/sid
/etc/os-release:
PRETTY_NAME="Ubuntu 24.04.4 LTS"
NAME="Ubuntu"
VERSION_ID="24.04"
VERSION="24.04.4 LTS (Noble Numbat)"
VERSION_CODENAME=noble
ID=ubuntu
ID_LIKE=debian
HOME_URL="https://www.ubuntu.com/"
SUPPORT_URL="https://help.ubuntu.com/"
BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/"
PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy"
UBUNTU_CODENAME=noble
LOGO=ubuntu-logo
/etc/lsb-release:
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=24.04
DISTRIB_CODENAME=noble
DISTRIB_DESCRIPTION="Ubuntu 24.04.4 LTS"
/proc/cpuinfo:
cpu: 6 AuthenticAMD AMD Ryzen 5 5500U with Radeon Graphics (x86_64)
cpu MHz: 2095.992
cache: 512 KB
/proc/meminfo:
MemTotal: 3464388 kB
Graphics:
00:02.0 VGA compatible controller [0300]: VMware SVGA II Adapter [15ad:0405]
Subsystem: VMware SVGA II Adapter [15ad:0405]
Kernel driver in use: vmwgfx

――――――――――――――――――――
Multisampling: False
Shadows: False
Shadow texture size: 2048
Silhouettes: False
Depth cue: True
Subdivision quality: 1.50
Single-layer transparency: True
Transparent background: False
Shaders supported: False
Using shader: False
Window size: 1214 679
Camera mode: mono
Orthographic projection: False
Center of rotation: front center
Near/far clipping: False
Key light: True
Fill light: True
Back light: False
Ambient light: 0.20
Specular sharpness: 30.00
Specular reflectivity: 1.00

――――――――――――――――――――
AntialiasLines: native
AntialiasPoints: native
BlendEquation: native
BlendFuncSeparate: native
BrokenAttribLocation: native, disabled
ChoosePixelFormat: not supported
ColorTable: not supported
CompileAndExecute: native
CompiledVertexArray: extension
CubeMap: native
CullVertex: not supported
DrawElementsInstanced: native, disabled
DrawRangeElements: native
FBConfig: native
FBOShadows: native
FastMultisampling: native, disabled
FramebufferMultisample: native
FramebufferObject: native
LimitVertexAttribDivisor: native, disabled
Multisample: native
Multitexture: native
PackedDepthStencil: native
PalettedTexture: not supported
PointParameters: native
SeamlessCubeMap: native
SeparateSpecularColor: native
Shading: native, disabled
Shadows: native
StereoMultisample: native
StereoRubberBanding: native
Texture3D: native
TextureColorTable: not supported
TextureEdgeClamp: native
TrustColorLogicBlend: native
TrustNormals: native
VertexArray: native
VertexAttrib: native
VertexAttribDivisor: native
VertexBufferObject: native
WindowPos: not supported
#27057 not_a_bug FindHBond: bad number of bonds pett gisele.ramox@…
Description 
The following bug report has been submitted:
Platform:        Linux64 (X11) Linux 6.17.0-20-generic x86_64
Chimera Version: 1.19_b42556
Description
(Describe the actions that caused this problem to occur here)

Open models
#0 protein.pdb


Reply log:
No incomplete side chains
No SEQRES records for protein.pdb (#0) chain A; guessing terminii instead
Chain-initial residues that are actual N terminii: THR 2.A
Chain-initial residues that are not actual N terminii: 
Chain-final residues that are actual C terminii: LEU 269.A
Chain-final residues that are not actual C terminii: 
Skipping possible acceptor with bad geometry: #0:152.A@O
Wrong number of grandchild atoms for phi/psi acceptor #0:152.A@O

Skipping possible acceptor with bad geometry: #0:153.A@O
Wrong number of grandchild atoms for phi/psi acceptor #0:153.A@O

Skipping possible acceptor with bad geometry: #0:152.A@O
Wrong number of grandchild atoms for phi/psi acceptor #0:152.A@O

Skipping possible acceptor with bad geometry: #0:153.A@O
Wrong number of grandchild atoms for phi/psi acceptor #0:153.A@O

Skipping possible acceptor with bad geometry: #0:152.A@O
Wrong number of grandchild atoms for phi/psi acceptor #0:152.A@O

Skipping possible acceptor with bad geometry: #0:152.A@O
Wrong number of grandchild atoms for phi/psi acceptor #0:152.A@O

Skipping possible acceptor with bad geometry: #0:153.A@O
Wrong number of grandchild atoms for phi/psi acceptor #0:153.A@O

Skipping possible acceptor with bad geometry: #0:152.A@O
Wrong number of grandchild atoms for phi/psi acceptor #0:152.A@O

Skipping possible acceptor with bad geometry: #0:153.A@O
Wrong number of grandchild atoms for phi/psi acceptor #0:153.A@O

Skipping possible acceptor with bad geometry: #0:152.A@O
Wrong number of grandchild atoms for phi/psi acceptor #0:152.A@O

Skipped 10 atom(s) with bad connectivities; see reply log for details

219 hydrogen bonds
Hydrogens added




residue name: SER
problem connectivity atom: 17
residue atoms:
1 C C2 (22.031 36.466 52.981)
2 CA C3 (20.919 36.967 52.067)
3 CA C3 (20.91 36.9 52.028)
4 CB C3 (21.14 38.469 51.833)
5 CB C3 (21.117 38.362 51.622)
6 H H (19.124 37.45 52.721)
7 HA HC (21.003 36.514 51.213)
8 HA HC (20.975 36.357 51.227)
9 HB2 HC (21.152 38.919 52.692)
10 HB2 HC (21.993 38.455 51.216)
11 HB3 HC (21.992 38.592 51.386)
12 HB3 HC (20.429 38.613 50.986)
13 HG H (20.273 39.856 50.928)
14 HG H (21.154 40.012 52.505)
15 N Npl (19.571 36.724 52.612)
16 O O2 (23.143 36.188 52.533)
17 OG O3 (20.126 39.036 51.038)
18 OG O3 (21.038 39.215 52.742)
residue bonds:
1<-> other N
15<-> 6
15<-> 2
2<-> 7
2<-> 4
2<-> 1
3<-> 15
3<-> 7
3<-> 4
3<-> 1
1<-> 16
4<-> 9
4<-> 11
4<-> 17
5<-> 2
5<-> 9
5<-> 11
5<-> 17
17<-> 13
18<-> 4
18<-> 13
8<-> 2
10<-> 4
12<-> 4
14<-> 17
other C<-> 15
problem: bad number of bonds (4)

――――――――――――――――――――
OpenGL Vendor: NVIDIA Corporation
OpenGL Renderer: NVIDIA GeForce RTX 3050/PCIe/SSE2
OpenGL Version: 4.6.0 NVIDIA 580.126.20
/etc/lsb-release:
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=24.04
DISTRIB_CODENAME=noble
DISTRIB_DESCRIPTION="Ubuntu 24.04.4 LTS"
/etc/os-release:
PRETTY_NAME="Ubuntu 24.04.4 LTS"
NAME="Ubuntu"
VERSION_ID="24.04"
VERSION="24.04.4 LTS (Noble Numbat)"
VERSION_CODENAME=noble
ID=ubuntu
ID_LIKE=debian
HOME_URL="https://www.ubuntu.com/"
SUPPORT_URL="https://help.ubuntu.com/"
BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/"
PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy"
UBUNTU_CODENAME=noble
LOGO=ubuntu-logo
/etc/debian_version:
trixie/sid
/proc/cpuinfo:
cpu: 12 GenuineIntel 12th Gen Intel(R) Core(TM) i5-12400F (x86_64)
cpu MHz: 4000.000
cache: 18432 KB
/proc/meminfo:
MemTotal: 32699196 kB
Graphics:
01:00.0 VGA compatible controller [0300]: NVIDIA Corporation GA107 [GeForce RTX 3050 8GB] [10de:2582] (rev a1)
Subsystem: NVIDIA Corporation GA107 [GeForce RTX 3050 8GB] [10de:2582]
Kernel driver in use: nvidia

――――――――――――――――――――
Multisampling: False
Shadows: False
Shadow texture size: 2048
Silhouettes: False
Depth cue: True
Subdivision quality: 1.50
Single-layer transparency: True
Transparent background: False
Shaders supported: True
Using shader: True
Window size: 753 552
Camera mode: mono
Orthographic projection: False
Center of rotation: front center
Near/far clipping: False
Key light: True
Fill light: True
Back light: False
Ambient light: 0.20
Specular sharpness: 30.00
Specular reflectivity: 1.00

――――――――――――――――――――
AntialiasLines: native
AntialiasPoints: native
BlendEquation: native
BlendFuncSeparate: native
BrokenAttribLocation: native, disabled
ChoosePixelFormat: not supported
ColorTable: native
CompileAndExecute: native, disabled
CompiledVertexArray: extension
CubeMap: native
CullVertex: not supported
DrawElementsInstanced: native
DrawRangeElements: native
FBConfig: native
FBOShadows: native
FastMultisampling: native
FramebufferMultisample: native
FramebufferObject: native
LimitVertexAttribDivisor: native, disabled
Multisample: native
Multitexture: native
PackedDepthStencil: native
PalettedTexture: not supported
PointParameters: native
SeamlessCubeMap: native
SeparateSpecularColor: native
Shading: native
Shadows: native
StereoMultisample: native
StereoRubberBanding: native
Texture3D: native
TextureColorTable: not supported
TextureEdgeClamp: native
TrustColorLogicBlend: native
TrustNormals: native
VertexArray: native
VertexAttrib: native
VertexAttribDivisor: native
VertexBufferObject: native
WindowPos: not supported
1 2 3 4 5 6 7 8 9 10 11 →

Query Language

query: TracLinks and the [[TicketQuery]] macro both use a mini “query language” for specifying query filters. Filters are separated by ampersands (&). Each filter consists of the ticket field name, an operator and one or more values. More than one value are separated by a pipe (|), meaning that the filter matches any of the values. To include a literal & or | in a value, escape the character with a backslash (\).

The available operators are:

= the field content exactly matches one of the values
~= the field content contains one or more of the values
^= the field content starts with one of the values
$= the field content ends with one of the values

All of these operators can also be negated:

!= the field content matches none of the values
!~= the field content does not contain any of the values
!^= the field content does not start with any of the values
!$= the field content does not end with any of the values

The date fields created and modified can be constrained by using the = operator and specifying a value containing two dates separated by two dots (..). Either end of the date range can be left empty, meaning that the corresponding end of the range is open. The date parser understands a few natural date specifications like "3 weeks ago", "last month" and "now", as well as Bugzilla-style date specifications like "1d", "2w", "3m" or "4y" for 1 day, 2 weeks, 3 months and 4 years, respectively. Spaces in date specifications can be omitted to avoid having to quote the query string.

created=2007-01-01..2008-01-01 query tickets created in 2007
created=lastmonth..thismonth query tickets created during the previous month
modified=1weekago.. query tickets that have been modified in the last week
modified=..30daysago query tickets that have been inactive for the last 30 days

See also: TracTickets, TracReports, TracGuide, TicketQuery

Note: See TracWiki for help on using the wiki.