Changes between Version 3 and Version 4 of SequenceStructureFeatures


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Timestamp:
May 12, 2010, 3:00:03 PM (16 years ago)
Author:
pett
Comment:

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  • SequenceStructureFeatures

    v3 v4  
    1313    * perhaps allow specifying Uniprot accession or BLAST on Uniprot for existing sequences, retrieve and load feature annotations as sequence regions (would require global alignment to Uniprot sequence for correct mapping of features when the existing sequence is not identical)
    1414    * on my secondary MAV to-do list. EFP
    15  1. ~~Matchmaker option to create post-fit alignment with Match->Align and refit on that to give more meaningful # of pairs and RMSD statistics along with the better alignment.  Perhaps even multiple such rounds, reporting stats and showing alignment only at the end. ECM~~ Done, though not as MatchMaker option.
     15 1. ~~Matchmaker option to create post-fit alignment with Match->Align and refit on that to give more meaningful # of pairs and RMSD statistics along with the better alignment.  Perhaps even multiple such rounds, reporting stats and showing alignment only at the end. ECM~~ Done, though not as !MatchMaker option.
    1616 1. MAV report all-by-all percent identities to Reply Log in form of a (text) matrix instead of a line for each pair.  ECM
    1717    * on my tertiary MAV to-do list. EFP