Changes between Version 60 and Version 61 of Release1.4


Ignore:
Timestamp:
Dec 2, 2008, 9:44:50 AM (17 years ago)
Author:
Scooter Morris
Comment:

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  • Release1.4

    v60 v61  
    44== Features Confirmed for 1.4 ==
    55These features are high priority for the 1.4 release.  If necessary, the release may be postponed if these features are near to completion so that they may be included.
     6 1. CMS Surface code.
     7 1. Off-screen image saving (using opengl write-to-texture?) so machine does not become unusable during animation encoding. TG
     8 1. Replace mac aqua focus-follows-mouse with click-through. Tk patch probably required. TG
     9 1. Nucleotides: saved in sessions, dialog settings maybe sticky, "nucleotides" command, possibly use in preset. ECM
     10 1. integrate Nucleotides GC
     11 1. Build Structure: allow bonding of one clump of atoms to another clump of atoms in a way that automatically repositions one clump instead of requiring the user to attempt to maneuver it into the appropriate bonding position. ECM
     12 1. Minimize Structure: don't call Dock Prep again if all atoms already have amberType and topology has not changed. ECM
     13 1. (planned/probable) Measure planes/centroids. EFP
     14 1. (planned/probable) Rename models using Model Panel. EFP
     15 1. (planned/probable) Coulombic surface coloring. EFP
     16 1. move Molecule color to Model GC
     17 1. Need "effects" command for controlling all Effects (not just these new things) via script. ECM
     18
     19=== Documentation ===
     20 1. Need new image-making tutorial(s) in addition to or replacing the current one. ECM
     21
     22=== Core 2 ===
     23
     24Electron tomography: Visualization of objects embedded in membranes e.g. nuclear pores in nuclear envelope, spikes in virus membranes.
     25
     26   1. be able to map volume gray levels onto curved membrane surfaces
     27   2. move membrane surface along normals while viewing gray levels
     28   3. annotate by coloring patches of surface
     29   4. place markers on surfaces
     30   5. extract volume regions around surface markers for subtomogram averaging (average density for several nuclear pores, virus spikes to achieve higher resolution).  Requires alignment capability and handling of tens to thousands of map subregions
    631
    732== Features Desired for 1.4 ==
    … …  
    121146   1. be able to map volume gray levels onto curved membrane surfaces
    122147   2. move membrane surface along normals while viewing gray levels
    123 
    124 
    125 
    126148   3. annotate by coloring patches of surface
    127149   4. place markers on surfaces