Changes between Version 47 and Version 48 of Release1.4

Timestamp:

Nov 26, 2008, 5:33:58 PM (17 years ago)

Author:

pett

Comment:

--

Release1.4

@@ -105 +105 @@
 
  * given a sequence alignment and associated structure, allow showing indels on structure relative to one of the sequences in the alignment (user specifies which structure and which sequence). ECM
+    * on my secondary MAV to-do list. EFP
 
  * allow editing sequence name. ECM
+    * on my secondary MAV to-do list. EFP
 
  * allow specifying "sequence to add" by accession code (GI number? Uniprot accession?). Its feature annotations would automatically come along as regions.  ECM
     * would we want Fetch by ID for sequences? (would we want a sequence with no structure and not aligned with any other sequences?)
     * perhaps allow specifying accession code for existing sequences, retrieve and load feature annotations as sequence regions (actually I don't know if that would work - what if the existing sequence and that database sequence were even slightly different?)
+    * on my secondary MAV to-do list. EFP
 
   * Matchmaker option to create post-fit alignment with Match->Align and refit on that to give more meaningful # of pairs and RMSD statistics along with the better alignment.  Perhaps even multiple such rounds, reporting stats and showing alignment only at the end. ECM
   
   * MAV report all-by-all percent identities to Reply Log in form of a (text) matrix instead of a line for each pair.  ECM
+    * on my tertiary MAV to-do list. EFP
 
-Most of the above aren't realistic for the 1.4 release given my work on other Chimera projects and on cluster backups.  However, most of these features aren't even on my radar at this point, so it would be good to have a discussion about them in order to begin to prioritize them so that perhaps some can make the 1.5 release. EFP
+Most of the above aren't realistic for the 1.4 release given my work on other Chimera projects and on cluster backups.  However, many of these features aren't even on my radar at this point, so it would be good to have a discussion about them in order to begin to prioritize them so that perhaps some can make the 1.5 release. EFP
 
-The things that I *do* have on my main MAV to-do list are:
+The things that I *do* have on my primary MAV to-do list are:
 
  * When aligning in a structure sequence, consider secondary structure markups of non-structure sequences