Changes between Version 46 and Version 47 of Release1.4

Timestamp:

Nov 26, 2008, 5:26:03 PM (17 years ago)

Author:

pett

Comment:

--

Release1.4

@@ -118 +118 @@
 Most of the above aren't realistic for the 1.4 release given my work on other Chimera projects and on cluster backups.  However, most of these features aren't even on my radar at this point, so it would be good to have a discussion about them in order to begin to prioritize them so that perhaps some can make the 1.5 release. EFP
 
+The things that I *do* have on my main MAV to-do list are:
+
+ * When aligning in a structure sequence, consider secondary structure markups of non-structure sequences
+ * If gaps are created while adding a sequence, make corresponding gaps in any markups
+ * Vertical scrolling of alignment with scroll wheel
+ * All add-sequence alignment parameters to be reset to defaults
+ * Be smarter about what to use as the default gap character when adding a sequence
+ * Aqua background -> gray, or put black border around sequence-name color swatches
+ * "Sticky" headers (and remove Conservation/Consensus from Layout prefs)
+ * "Diffing" of sequence/node against consensus/node/remainder of alignment
+ * Symbols (cylinders, stars, etc.) in headers, and then manual header creation
+ * Extract region into new alignment
+ * Tree improvements: session save/restore; handle sequence addition/deletion; hide/show nodes; delete node; conservation/consensus of nodes; highlight node sequences; show numeric branch weights; restrict operations to nodes; trees where alignment isn't 1-to-1
+
+The first two items are the ones with the best chance of making the 1.4 release.
+
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