Changes between Version 13 and Version 14 of Release1.4


Ignore:
Timestamp:
Nov 24, 2008, 4:37:52 PM (17 years ago)
Author:
meng
Comment:

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  • Release1.4

    v13 v14  
    1414 1. Replace mac aqua focus-follows-mouse with click-through. Tk patch probably required. TG
    1515 1. Record usage statistics, submit with registration. TG
    16  1. connect to our own Web service to BLAST on PDB, provide dialog for choosing which hits to open, whether to show pairwise sequence alignment from BLAST (in MAV), whether to superimpose hit and query (with Matchmaker). ECM
    17     * (NR database too? PSI-BLAST on NR?)
    18  1. connect to our own Web service to multiple sequence alignment program (Muscle, T-Coffee, ... see [http://www.cgl.ucsf.edu/home/meng/sources.html#d list and links]), show result in MAV. ECM
    19  1. Nucleotides saved in sessions, dialog settings sticky, "nucleotides" command, possibly used in preset. ECM
    20  1. MD Movie checkbox in Per-Frame panel to recompute secondary structure (make it more obvious that ribbon display may need to be updated). ECM
     16 1. Provide our own Web services for sequence search, sequence alignment (see Core 4). ECM
     17 1. Nucleotides: saved in sessions, dialog settings maybe sticky, "nucleotides" command, possibly use in preset. ECM
     18 1. MD Movie: checkbox in Per-Frame panel and/or Record Movie panel to recompute secondary structure (make it more obvious that ribbon display may need to be updated). ECM
    2119 1. Build Structure allow bonding of one clump of atoms to another clump of atoms in a way that automatically repositions one clump instead of requiring the user to attempt to maneuver it into the appropriate bonding position. ECM
    2220
    … …  
    8078==== Sequence/Structure (Core 4) ====
    8179
    82  * send sequence alignment to multiple alignment Web server. ECM
    83  * show sequence alignment returned by Web server (from BLAST on PDB, PSI-BLAST on NR, multiple alignment, etc.) ECM
     80 * connect to our own Web service to BLAST on PDB, provide dialog for choosing which hits to open, whether to show pairwise sequence alignment from BLAST (in MAV), whether to superimpose hit and query (with Matchmaker). ECM
     81    * (search other databases such as NR? PSI-BLAST on NR?)
     82 * connect to our own Web service to multiple sequence alignment program (Muscle, T-Coffee, ... see [http://www.cgl.ucsf.edu/home/meng/sources.html#d list and links]), show result in MAV. ECM
    8483 * allow editing sequence name. ECM
    8584 * allow specifying sequence accession (Uniprot perhaps?) for annotation retrieval. ECM