Changes between Version 21 and Version 22 of HIVspikes


Ignore:
Timestamp:
Oct 8, 2009, 3:00:32 PM (17 years ago)
Author:
meng
Comment:

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  • HIVspikes

    v21 v22  
    161161Open 1gc1 and the alignment pdb1gc1.aln (attached).  Ahead of time, use Multalign Viewer Preferences... Headers to change Conservation style to AL2CO (otherwise default). Then use Structure... Render by Conservation and adjust settings as shown in the Render dialog (lowest or most variable red, highest or most conserved blue, no-value residues gray).
    162162
    163 [[Image(colorcons.png)]] [[Image(render-cons.png)]]
     163[[Image(conscolor.png)]] [[Image(cons-render.png)]]
    164164
    165165The gray segment in gp120 is where the alignment column had too few sequences (too many gaps) to calculate a reliable conservation value.  Clearly the interfaces are not at the reddest, most variable surface of the gp120 core structure.