Changes between Version 2 and Version 3 of Grant/chimeraplan

Timestamp:

Mar 18, 2011, 9:49:52 AM (15 years ago)

Author:

meng

Comment:

--

Grant/chimeraplan

@@ -13 +13 @@
   * Help users with dissemination
  - Analysis improvements
+    * structure in Chimera -> network in Cytoscape, based on:
+      * residue-residue distance cutoff (as would be used by coarse-grained models)
+      * residue-residue contact (from Find Clashes/Contacts)
+      * H-bonding (from FindHBond)
+      * as above except chain-chain instead of residue-residue (i.e. diagram of complex), edges annotated with numbers of contacts
+    * structure in Chimera -> residue-residue contact map (2D plot)
+    * trajectory timeline plots of various measurables
  * Sequence information
    * Compact depiction of large alignments as histograms (ala Profile Grids)