Appendix CD-ROM

For this renewal, all appendix material must be submitted on a CD-ROM. This is great because we can format the CD for browsing via a web browser and so much of the material we'll want to include is already in HTML format. Here's the current list of appendix material:

• Reprints of published papers from technology research and development projects (past 5 years)
• 100 selected publications that cite Chimera
  • ...more complete but uglier lists: [through 2006][2007][2008][2009][2010][1st 6mos 2011]
• List of all publications resulting from our Center since last review
• List of co-authored publications from PMT Collaborative Project
• Chimera User Documentation (PDF version)
• Selected Materials used for Interactive Training
  • Extending UCSF Chimera with Python Code
  • 2011 EMAN Workshop Chimera Tutorial (instructions ​HTML and ​PDF and ​video 250 Mbytes, ​data)
  • EM fitting ​tutorial, full day, for ​EMBO practical course "The combination of electron microscopy and x-ray crystallography for the structure determination of large biological complexes", 2009
  • Tour of the Structure-Function Linkage Database
  • Analysis and Visualization of Biological Networks with Cytoscape
• Web-based Chimera Video Tutorials
  • Hepatitis B virus model from Viral Outbreak DVD, 2:45 minutes (​Flash, ​H.264)
  • Fitting a crystal structure into a EM density map, 2 minutes (​Flash, ​H.264)
  • Extracting density rotated relative to original EM map, 5 minutes
  • Finding surface residues of an influenza virus protein, 5 minutes
• 2011 Annual Progress Report
• 2009 Advisory Committee Report
• Vendor quotations for items listed in equipment budget