= Items for Appendix =

For this renewal, all appendix material must be submitted on a CD-ROM.  This is great because we can format the CD for browsing via a web browser and so much of the material we'll want to include is already in HTML format.  Here's the current list of appendix material:

 * Reprints of published papers from technology research and development projects (past 5 years)
 * 100 selected publications that cite Chimera
  * ...more complete but uglier lists: [through 2006][2007][2008][2009][2010][1st 6mos 2011]
 * List of all publications resulting from our Center since last review
 * List of co-authored publications from Collaborative Project #4
 * Chimera User Documentation (PDF version)
 * Selected Materials used for Interactive Training
  * Extending UCSF Chimera with Python Code
  * 2011 EMAN Workshop Chimera Tutorial (instructions [http://wwwtest.cgl.ucsf.edu/chimera/tutorials/eman2011/index.html HTML] and [http://wwwtest.cgl.ucsf.edu/chimera/tutorials/eman2011/eman2011.pdf PDF] and [http://www.cgl.ucsf.edu/chimera/videodoc/RousSarcomaVirus/ video] 250 Mbytes, [http://wwwtest.cgl.ucsf.edu/chimera/tutorials/eman2011/eman2011.zip data])
  * Fitting Molecular Models into EM Maps
  * Tour of the Structure-Function Linkage Database
  * Analysis and Visualization of Biological Networks with Cytoscape
 * Web-based Chimera Video Tutorials
  * Viral Outbreak intro video, 3 minutes ([http://www.cgl.ucsf.edu/chimera/videodoc/ViralOutbreak2Part1/ Flash], [http://www.cgl.ucsf.edu/chimera/videodoc/ViralOutbreak2Part1/media/ViralOutbreak2Part1.mp4 H.264])
  * Segger segmentation and fitting, 2 minutes ([http://www.cgl.ucsf.edu/chimera/videodoc/segfit/ Flash], [http://www.cgl.ucsf.edu/chimera/videodoc/segfit/media/segfit2.mp4 H.264])
 * 2011 Annual Progress Report
 * 2009 Advisory Committee Report
 * Vendor quotations for items listed in equipment budget